Data Science Core

The Data Science Core specializes in artificial intelligence-based approaches to elucidate relationships between large imaging, bioenergetics, genomic, and proteomic data sets.

Data acquired from the AIMRC Imaging and Spectroscopy Core and Bioenergetics Core can be directly uploaded to a cluster storage sever for use by data analysis tools and computational resources (including a dedicated AIMRC GPU cluster).

Key Equipment Contained in the Data Science Core:

Data Science Core Services:

• Provide foundational training for those getting started with high-performance computing and Arkansas Research Platform (ARP). Topics would cover OpenOnDemand portal, running jobs on terminal, modules, file systems, moving data, bioimaging software support on ARP, and demos.
• Provide training for Python programming, basic data mining, and machine learning.
• Provide training of open-source deep learning based biomedical imaging resources, including DeepImageJ, CSBDeep, ZeroCostDL4Mic, and Bioimage Model Zoo.
• Provide customized deep learning solutions for biomedical imaging analysis tasks such as image restoration, image segmentation, and image quantification and tracking.
• Provide customized solutions for multi-omics data integration and analysis.
• Data Science Core staff are available to assist center members with their research by developing novel algorithms and quantitative analysis pipelines for large datasets.

Resources:

For more information on previous workshops offered, copies of previous workshop sides, and shared communications with our core, click here for our GitHub Repository.

Please contact our Data Science Core Director or Core Manager to discuss data analysis services, schedule access to the equipment, or discuss your research needs.